max planck institut
informatik

Analysis

Contents

1. Dataset Versions
2. Constructing a Domain Graph
3. Integration of Expression Data for Single Experiments
4. Integration of AltAnalyze Data
5. Preprocessing of Affymetrix Data
6. Analysis
7. Options

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Analysis

The analysis is intended for protein networks with Affymetrix data integration for single experiments.
DomainGraph provides the computation of the intersection, union and difference of two domain graphs. For this purpose, the plugin does not only
distinguish between equal and differing proteins and domains, but also between their types (normally expressed, spliced, etc.). This makes it easy
to visualize e.g. expression differences among different tissues. Equal proteins and domains with a different type are displayed with a
dark blue color.

Please see an example here.

• Algorithms & Complexity
• Computer Vision and Machine Learning
• Internet Architecture
• Computer Graphics
• Databases and Information Systems
• Research Group Computational Biology
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  • Software
    • DomainGraph
    • Documentation
    • Tutorial
    • Sample Data
    • Download
• Automation of Logic